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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Matn2, matrilin 2
Sequence ID:NM_016762
Entrez Gene ID:17181
Ensembl ID:ENSMUSG00000022324

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15|15 B3.3

Chromosomal Position (from UCSC)

Chromosomal Position:15: 34306684 - 34429042

 Exon Info From UCSC:
NM_016762

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3492881Full LengthBC005429matrilin 2
5063535Full LengthBC092298matrilin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058042  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016762 NP_058042 O08746 EGF
VWA

Related Sequences

 
mRNAGenPeptSwissProt
U69262 AAC53163 O08746
BC005429 AAH05429 Q99K64
BC092298 AAH92298 Q569V0
AK081339 BAC38200 Q8C4R9
AK083151 BAC38785 Q8C435
AK163818 BAE37504 Q3TQ80

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Matn2 NP_058042 R.norvegicus Matn2 299996   XP_216941 94
H.sapiens MATN2 4147 Gene Info NP_002371 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)