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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rpl3, ribosomal protein L3
Sequence ID:NM_013762
Entrez Gene ID:27367
Ensembl ID:ENSMUSG00000060036

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 80077795 - 80083352

NM_013762 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11147990821079908323
1152347990841679908535
2353307990876079908855
3314327990913679909237
4335937991011979910279
5947807991079579910981
7819167991132579911460
91710857991204479912212
108612787991281979913011
127913617991375379913835

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3485069Full LengthBC009655ribosomal protein L3
3676103Full LengthBC094059ribosomal protein L3
6504713Full LengthBC083134ribosomal protein L3
9007342Full LengthBC158039ribosomal protein L3
30538513IncompleteBC085495ribosomal protein L3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038790  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009303 NP_033329 Q3U6D7 MARVEL
NM_013762 NP_038790 P27659 Ribosomal_L3
NM_207708 NP_997591 O55100 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
U89417 AAC36524 P27659
BC009655 AAH09655 P27659
BC083134 AAH83134 P27659
BC094059 AAH94059 P27659
BC138728 AAI38729 O55100
BC138729 AAI38730 O55100
BC158039 AAI58040 P27659
AK002972 BAB22487 O55100
AK010442 BAB26943 O55100
Q3U6D7
AK044007 BAC31736 O55100
AK088993 BAC40691 P27659
AK144518 BAE25922 P27659
AK144816 BAE26078 P27659
AK146502 BAE27217 P27659
AK149494 BAE28917 P27659
AK151057 BAE30074 Q3UB90
AK151084 BAE30097 Q3UB67
AK151142 BAE30149 Q3UB15
AK151426 BAE30390 Q3U9L3
AK151596 BAE30536 P27659
AK151740 BAE30653 Q3U9L3
AK153096 BAE31717 Q3U6D7
AK153187 BAE31788 Q3U6D7
AK156134 BAE33600 Q3U6D7
AK166433 BAE38773 P27659
AK166825 BAE39049 P27659
AK167787 BAE39818 P27659
AK167947 BAE39950 P27659
AK168040 BAE40022 P27659
AK168059 BAE40037 P27659
AK168126 BAE40095 P27659
AK168128 BAE40097 P27659
AK168224 BAE40178 P27659
AK168744 BAE40585 P27659
AK169060 BAE40848 P27659
AK169235 BAE41003 P27659
AK169321 BAE41075 P27659
AK170819 BAE42051 P27659
AK172280 BAE42921 Q3T9U9
AJ002306 CAA05323 O55100
Q3U6D7
Y00225 CAA68370 P27659

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rpl3 NP_038790 R.norvegicus Rpl3 300079   NP_942048 100
H.sapiens RPL3 6122 Gene Info NP_000958 99
D.melanogaster RpL3 41347   NP_524316 75
C.elegans rpl-3 175501   NP_001021254 72
A.gambiae AgaP_AGAP003556 1274215   XP_313303 72
S.pombe rpl302 2543309   NP_594780 70
S.pombe rpl301 2542265   NP_593471 70
S.cerevisiae RPL3 854229   NP_014706 69
A.thaliana RPL3B 842454   NP_176352 67
N.crassa NCU06843 3879466   XP_963317 67
A.thaliana RP1 840916   NP_001185151 66
P.falciparum PF10_0272 810429   XP_001347556 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)