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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Irf3, interferon regulatory factor 3
Sequence ID:NM_016849
NR_045611
Entrez Gene ID:54131
Ensembl ID:ENSMUSG00000003184

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 B2

Chromosomal Position (from UCSC)

Chromosomal Position:7: 44997659 - 45002389

NM_016849 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12495225302952253277
2504225225407452254246
4235945225526152255432
5956655225552352255593
6668405225574152255915
84112185225601452256391
121913345225704252257157
133520195225753352258217

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5690948Full LengthBC050882interferon regulatory factor 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058545  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016849 NP_058545 P70671
Q3U9K6
IRF

Related Sequences

 
mRNAGenPeptSwissProt
U75839 AAB36924 P70671
Q3U9K6
U75840 AAB36925 P70671
Q3U9K6
BC050882 AAH50882 P70671
Q3U9K6
EU545481 ACD67887 C0IXK2
AK145977 BAE26800 P70671
Q3U9K6
AK146378 BAE27126 Q3UJM9
AK151750 BAE30660 P70671
Q3U9K6
AK152689 BAE31420 P70671
Q3U9K6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Irf3 NP_058545 R.norvegicus Irf3 292892   NP_001006970 89
H.sapiens IRF3 3661 Gene Info NP_001562 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta