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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc6a6, solute carrier family 6 (neurotransmitter transporter, taurine), member 6
Sequence ID:NM_009320
Entrez Gene ID:21366
Ensembl ID:ENSMUSG00000030096

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 D1|6 38.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 91684094 - 91726665

 Exon Info From UCSC:
NM_009320

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4242193Full LengthBC015245solute carrier family 6 (neurotransmitter transporter, taurine), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033346  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009320 NP_033346 Q3UPI8
O35316
SNF

Related Sequences

 
mRNAGenPeptSwissProt
L03292 AAB54039 Q3UPI8
O35316
BC015245 AAH15245 Q3UPI8
O35316
AK041141 BAC30836 Q8BRX2
AK143510 BAE25407 Q3UPI8
O35316

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc6a6 NP_033346 R.norvegicus Slc6a6 29464   NP_058902 99
H.sapiens SLC6A6 6533 Gene Info NP_001127839 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)