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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Fdps, farnesyl diphosphate synthetase
Sequence ID:NM_001253751
NM_134469
Entrez Gene ID:110196
Ensembl ID:ENSMUSG00000059743

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1|3 42.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 89093587 - 89101872

Transcript StartTranscript EndChromosomal Start Chromosomal End
12568889750988897764
2573918889815288898286
3924698889837388898450
4705428889878188898853
5436318889893588899023
6327548889927588899397
7558358889952088899600
8369768890322188903361
97711398890459088904752
114012238890578388905866

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6531586Full LengthBC048497farnesyl diphosphate synthetase
6595030Full LengthBC087886farnesyl diphosphate synthetase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_608219  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001253751 NP_001240680      
NM_134469 NP_608219 Q4FJN9
Q920E5
EC 2.5.1.10
EC 2.5.1.1
polyprenyl_synt

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC048497 AAH48497 Q4FJN9
Q920E5
EC 2.5.1.10
EC 2.5.1.1
BC087886 AAH87886 Q5M8R9  
AF309508 AAL09445 Q4FJN9
Q920E5
EC 2.5.1.10
EC 2.5.1.1
AK088601 BAC40446 Q4FJN9
Q920E5
EC 2.5.1.10
EC 2.5.1.1
AK140881 BAE24508 Q3US29  
AK166026 BAE38529 Q3TMB3  
AK168008 BAE39995 Q4FJN9
Q920E5
EC 2.5.1.10
EC 2.5.1.1
CT010365 CAJ18572 Q4FJN9
Q920E5
EC 2.5.1.10
EC 2.5.1.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Fdps NP_608219 R.norvegicus Fdps 83791   NP_114028 93
H.sapiens FDPS 2224 Gene Info NP_001995 84
S.pombe fps1 2542898   NP_593299 51
N.crassa NCU01175 3877737   XP_961541 49
S.cerevisiae ERG20 853272   NP_012368 46
D.melanogaster Fpps 36209   NP_477380 45
A.gambiae AgaP_AGAP007104 1269998   XP_308653 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)