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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Snph, syntaphilin
Sequence ID:NM_198214
Entrez Gene ID:241727
Ensembl ID:ENSMUSG00000027457

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 G3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 151590561 - 151632533

NM_198214 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14050151416285151420334
40514200151422844151422993
42014407151425992151426198
44084504151426713151426809
45054611151457883151457989
46124689151458191151458268

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40096951Full LengthBC117896syntaphilin
40096952Full LengthBC117897syntaphilin
4506106IncompleteBC038601syntaphilin
6419250IncompleteBC072567syntaphilin
6813707IncompleteBC096541syntaphilin
40096958IncompleteBC139792syntaphilin

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198214 NP_937857    

Related Sequences

 
mRNAGenPeptSwissProt
BC072567 AAH72567 Q80U23
BC096541 AAH96541 Q80U23
BC117896 AAI17897 Q80U23
BC117897 AAI17898 Q80U23
BC139792 AAI39793 Q80U23
AK047568 BAC33090 Q80U23
AK122262 BAC65544 Q80U23

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snph NP_937857 R.norvegicus Snph 296267   NP_001099995 96
H.sapiens SNPH 9751 Gene Info NP_055538 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)