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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rap1b, RAS related protein 1b
Sequence ID:NM_024457
Entrez Gene ID:215449
Ensembl ID:ENSMUSG00000052681

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 D2|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 117814545 - 117845956

NM_024457 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11184117251652117252835
11851301117254399117254515
13021445117255521117255664
14461586117257517117257657
15871643117258645117258701
16441712117259856117259924
17131793117261649117261729
17941937117282886117283029

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9056441Full LengthBC147391RAS related protein 1b
9056464Full LengthBC147390RAS related protein 1b
9087459Full LengthBC147700RAS related protein 1b
9087472Full LengthBC147713RAS related protein 1b

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077777  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024457 NP_077777 Q52L50
Q99JI6
Ras

Related Sequences

 
mRNAGenPeptSwissProt
BC033382 AAH33382 Q52L50
Q99JI6
BC052480 AAH52480 Q52L50
Q99JI6
BC094066 AAH94066 Q52L50
Q99JI6
BC147390 AAI47391 Q52L50
BC147391 AAI47392 Q52L50
BC147700 AAI47701 Q52L50
BC147713 AAI47714 Q52L50
M79314 AAK14823 Q99JI6
AK143910 BAE25597 Q52L50
Q99JI6
AK153870 BAE32223 Q52L50
Q99JI6
AK163242 BAE37252 Q52L50
Q99JI6
AK167548 BAE39614 Q52L50
Q99JI6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rap1b NP_077777 H.sapiens RAP1B 5908 Gene Info NP_056461 100
R.norvegicus Rap1b 171337   NP_599173 99
S.cerevisiae RSR1 853056   NP_011668 60
N.crassa NCU02167 3880678   XP_964526 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta