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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox1, SRY-box containing gene 1
Sequence ID:NM_009233
Entrez Gene ID:20664
Ensembl ID:ENSMUSG00000096014

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8 A1-A2|8 4.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:8: 12396348 - 12397540

NM_009233 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
140371239551812399554

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069514Full LengthBC172706SRY-box containing gene 1
100069408BC172600SRY-box containing gene 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033259  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009233 NP_033259 P53783 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC172600 AAI72600  
BC172706 AAI72706  
AB108672 BAC75667 Q80XF2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox1 NP_033259 H.sapiens SOX1 6656 Gene Info NP_005977 99
A.gambiae AgaP_AGAP009957 1279377   XP_319093 49
D.melanogaster SoxN 44275   NP_524735 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)