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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Upf1, UPF1 regulator of nonsense transcripts homolog (yeast)
Sequence ID:NM_001122829
NM_030680
Entrez Gene ID:19704
Ensembl ID:ENSMUSG00000058301

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8 B3.3|8 33.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:8: 70331524 - 70353279

 Exon Info From UCSC:
NM_001122829
NM_030680

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5702493Full LengthBC056442UPF1 regulator of nonsense transcripts homolog (yeast)
6332288Full LengthBC052149UPF1 regulator of nonsense transcripts homolog (yeast)
4511355IncompleteBC030916UPF1 regulator of nonsense transcripts homolog (yeast)
5368537IncompleteBC038921UPF1 regulator of nonsense transcripts homolog (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_109605  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001122829 NP_001116301 Q9EPU0  
NM_030680 NP_109605   ResIII

Related Sequences

 
mRNAGenPeptSwissProt
AF322655 AAG42830 Q9EPU0
BC030916 AAH30916 Q9EPU0
BC052149 AAH52149 Q9EPU0
BC056442 AAH56442 Q9EPU0
AF182947 AAK08652 Q9EPU0
AK148196 BAE28409 Q9EPU0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Upf1 NP_001116301 H.sapiens UPF1 5976 Gene Info NP_002902 99
D.melanogaster Upf1 32153   NP_572767 69
A.gambiae AgaP_AGAP001133 1282033   XP_322028 67
A.thaliana LBA1 834747   NP_199512 64
N.crassa NCU04242 3877396   XP_961233 61
S.pombe upf1 2542327   NP_593080 60
S.cerevisiae NAM7 855104   NP_013797 57
C.elegans smg-2 171696   NP_490829 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)