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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ctla4, cytotoxic T-lymphocyte-associated protein 4
Sequence ID:NM_009843
Entrez Gene ID:12477
Ensembl ID:ENSMUSG00000026011

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 C|1 30.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 60909170 - 60914724

NM_009843 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12556096586860966122
2566036096926660969613
6047136097006260970171
71419316097145660972673

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4936052Full LengthBC042741cytotoxic T-lymphocyte-associated protein 4
30072821Full LengthBC052683cytotoxic T-lymphocyte-associated protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033973  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009843 NP_033973 Q6GTR6 V-set

Related Sequences

 
mRNAGenPeptSwissProt
U90270 AAD00696 Q9Z1A8
BC042741 AAH42741 Q6GTR6
BC052683 AAH52683 Q7TMX1
AB097214 BAC41333 Q8CH94
X05719 CAA29191 P09793

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctla4 NP_033973 R.norvegicus Ctla4 63835   NP_113862 91
H.sapiens CTLA4 1493 Gene Info NP_005205 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta