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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clstn1, calsyntenin 1
Sequence ID:NM_023051
Entrez Gene ID:65945
Ensembl ID:ENSMUSG00000039953

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 149586637 - 149647899

 Exon Info From UCSC:
NM_023051

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6315355Full LengthBC053843calsyntenin 1
5358946IncompleteBC029027calsyntenin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_075538  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023051 NP_075538 Q9EPL2 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC029027 AAH29027 Q9EPL2
BC053843 AAH53843 Q9EPL2
AK173059 BAD32337 Q9EPL2
AJ289016 CAC17788 Q9EPL2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clstn1 NP_075538 R.norvegicus Clstn1 313717   XP_243040 98
H.sapiens CLSTN1 22883 Gene Info NP_001009566 93
C.elegans casy-1 174006   NP_001021110 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)