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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ift80, intraflagellar transport 80
Sequence ID:NM_026641
Entrez Gene ID:68259
Ensembl ID:ENSMUSG00000027778

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 E2

Chromosomal Position (from UCSC)

Chromosomal Position:3: 68893644 - 68920105

 Exon Info From UCSC:
NM_026641

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4501451Full LengthBC034101intraflagellar transport 80 homolog (Chlamydomonas)
3603535IncompleteBC013814intraflagellar transport 80 homolog (Chlamydomonas)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080917  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026641 NP_080917 Q8K057 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC013814 AAH13814 Q8K057
BC034101 AAH34101 Q8K057
AK042231 BAC31200 Q8K057
AK077870 BAC37042 Q8BP28
AK129339 BAC98149 Q8K057

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ift80 NP_080917 R.norvegicus Ift80 295106   NP_001013933 98
H.sapiens IFT80 57560 Gene Info NP_065851 95
C.elegans che-2 180401   NP_508106 41
A.gambiae AgaP_AGAP010190 1279610   XP_319368 37
D.melanogaster Oseg5 35349   NP_610064 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)