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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rab11b, RAB11B, member RAS oncogene family
Sequence ID:NM_008997
Entrez Gene ID:19326
Ensembl ID:ENSMUSG00000077450

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 33747667 - 33760262

NM_008997 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
153303387942833884757
533154113388545433885534
541256053388581133886004
560658013388672633886921
580260653389716733897430

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6411651Full LengthBC054753RAB11B, member RAS oncogene family
6478784Full LengthBC085270RAB11B, member RAS oncogene family
9007344Full LengthBC157916RAB11B, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033023  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008997 NP_033023 Q78ZJ8
P46638
Ras

Related Sequences

 
mRNAGenPeptSwissProt
L26528 AAC42093 Q78ZJ8
P46638
BC054753 AAH54753 Q78ZJ8
P46638
BC085270 AAH85270 Q78ZJ8
P46638
BC157916 AAI57917 Q78ZJ8
AK134125 BAE22024 Q3UZ37
AK146452 BAE27183 Q78ZJ8
P46638
AK146460 BAE27188 Q78ZJ8
P46638
AK146623 BAE27312 Q78ZJ8
P46638
AK146978 BAE27582 Q78ZJ8
P46638
AK147077 BAE27658 Q78ZJ8
P46638
AK148022 BAE28293 Q78ZJ8
P46638
AK148106 BAE28347 Q78ZJ8
P46638
AB232606 BAF02868 Q78ZJ8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rab11b NP_033023 H.sapiens RAB11B 9230 Gene Info NP_004209 99
R.norvegicus Rab11b 79434   NP_116006 99
A.thaliana RABA1e 827574   NP_193578 74
S.cerevisiae YPT32 852662   NP_011305 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)