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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ecm2, extracellular matrix protein 2, female organ and adipocyte specific
Sequence ID:NM_001012324
Entrez Gene ID:407800
Ensembl ID:ENSMUSG00000043631

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13|13 B1

Chromosomal Position (from UCSC)

Chromosomal Position:13: 49504954 - 49507671

NM_001012324 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11964960017849600373
1975024961016249610467
5036914961367049613858
69211924961594049616440
119313084961814449618259
130914444961969149619826
144516024962297849623135
160317424962424249624381
174320694962543349625759
207035964962663149628157

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5708030Full LengthBC065151extracellular matrix protein 2, female organ and adipocyte specific
30295705Full LengthBC089559extracellular matrix protein 2, female organ and adipocyte specific
6815352IncompleteBC056468extracellular matrix protein 2, female organ and adipocyte specific

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001012324  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001012324 NP_001012324 Q5FW85 VWC
LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
BC065151 AAH65151 Q5FW85
BC089559 AAH89559 Q5FW85
AK018561 BAB31276 Q9D314
AK038812 BAE20541 Q5FW85
AK040995 BAE20587 Q5FW85
AK134746 BAE22265 Q5FW85

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ecm2 NP_001012324 H.sapiens ECM2 1842 Gene Info NP_001384 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)