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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. 1110051M20Rik, RIKEN cDNA 1110051M20 gene
Sequence ID:NM_175123
Entrez Gene ID:228356
Ensembl ID:ENSMUSG00000040591

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E1|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 91278264 - 91444674

NM_175123 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111309111798491119113
113111949111934691119409
119513049112190291122011
130515009112262191122816
150115869112439191124476
158716719114490591144989
167218029122388591224015
180319059126202291262124
190619799128472591284798

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6440075Full LengthBC085239RIKEN cDNA 1110051M20 gene
6843427Full LengthBC089006RIKEN cDNA 1110051M20 gene
6707803IncompleteBC049648RIKEN cDNA 1110051M20 gene

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001166024 NP_001159496    
NM_023854 NP_076343 Q99K28 ArfGap
NM_175123 NP_780332 Q8BHR8  

Related Sequences

 
mRNAGenPeptSwissProt
AF229439 AAF91258 Q99K28
BC005495 AAH05495 Q99K28
BC049648 AAH49648 Q810Q1
BC085239 AAH85239 Q8BHR8
BC089006 AAH89006 Q8BHR8
EF437354 ABS83520 B0LAC6
AK009565 BAB26362 Q99K28
AK045977 BAC32558 Q8BHR8
AK141749 BAE24821 Q3UR67
AK149837 BAE29114 Q99K28
AK164320 BAE37736 Q8BHR8
AK168489 BAE40376 Q99K28
AK169144 BAE40923 Q99K28

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 1110051M20Rik NP_780332 R.norvegicus RGD1309540 295930   NP_001013940 99
H.sapiens C11orf49 79096 Gene Info NP_001003677 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)