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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tnfaip1, tumor necrosis factor, alpha-induced protein 1 (endothelial)
Sequence ID:NM_001159392
NM_009395
Entrez Gene ID:21927
Ensembl ID:ENSMUSG00000017615

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B5|11 45.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 78522907 - 78536173

 Exon Info From UCSC:
NM_001159392
NM_009395

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3484017Full LengthBC003906tumor necrosis factor, alpha-induced protein 1 (endothelial)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033421  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001159392 NP_001152864    
NM_009395 NP_033421 O70479 K_tetra

Related Sequences

 
mRNAGenPeptSwissProt
BC003906 AAH03906 O70479
AK004593 BAB23395 O70479
AK034305 BAC28668 O70479
AK079869 BAC37770 O70479
AK147809 BAE28152 O70479
AK168386 BAE40313 O70479
AK168704 BAE40546 O70479
AK172287 BAE42927 Q3T9U3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tnfaip1 NP_001152864 R.norvegicus Tnfaip1 287543   NP_891995 98
H.sapiens TNFAIP1 7126 Gene Info NP_066960 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)