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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clcn1, chloride channel 1
Sequence ID:NM_013491
Entrez Gene ID:12723
Ensembl ID:ENSMUSG00000029862

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 B2.1|6 22.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 42314178 - 42315754

 Exon Info From UCSC:
NM_013491

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40048966Full LengthBC114336chloride channel 1
40048972IncompleteBC126895chloride channel 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038519  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013491 NP_038519 Q64347 CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
BC114336 AAI14337 Q64347
AY046403 AAL05907 Q8K3N1
AY046404 AAL05908 Q8K3N0
AK036735 BAC29557 Q64347
AK161489 BAE36420 Q3TTA5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clcn1 NP_038519 R.norvegicus Clcn1 25688   NP_037279 96
H.sapiens CLCN1 1180 Gene Info NP_000074 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)