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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scn8a, sodium channel, voltage-gated, type VIII, alpha
Sequence ID:NM_001077499
NM_011323
Entrez Gene ID:20273
Ensembl ID:ENSMUSG00000023033

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F1|15 60.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 100936324 - 101040688

 Exon Info From UCSC:
NM_001077499
NM_011323

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035453  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001077499 NP_001070967    
NM_011323 NP_035453 Q9WTU3 Ion_trans
IQ
Na_trans_assoc

Related Sequences

 
mRNAGenPeptSwissProt
U23158 AAA65599 Q9WTU3
U26707 AAC52242 Q9WTU3
AF049617 AAD20438 Q9WTU3
BC099466 AAH99466 Q4KL32
AY510077 AAS89686  
AY510078 AAS89687  
AY510079 AAS89688  
AK158609 BAE34580 Q9WTU3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scn8a NP_035453 R.norvegicus Scn8a 29710   NP_062139 100
H.sapiens SCN8A 6334 Gene Info NP_055006 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)