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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cspg5, chondroitin sulfate proteoglycan 5
Sequence ID:NM_001166273
NM_013884
Entrez Gene ID:29873
Ensembl ID:ENSMUSG00000032482

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F2|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 110245597 - 110262221

 Exon Info From UCSC:
NM_001166273
NM_013884

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6412504Full LengthBC055736chondroitin sulfate proteoglycan 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038912  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001166273 NP_001159745 Q71M36  
NM_013884 NP_038912   Chon_Sulph_att
Neural_ProG_Cyt

Related Sequences

 
mRNAGenPeptSwissProt
AF133700 AAF23362 Q71M36
BC055736 AAH55736 Q71M36
AF461090 AAQ04777 Q71M36
AF461091 AAQ04778 Q71M36
AF461092 AAQ04779 Q71M36
AK053891 BAC35578 Q71M36

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cspg5 NP_001159745 R.norvegicus Cspg5 50568   NP_598413 95
H.sapiens CSPG5 10675 Gene Info NP_001193872 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)