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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tmod3, tropomodulin 3
Sequence ID:NM_016963
Entrez Gene ID:50875
Ensembl ID:ENSMUSG00000058587

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 D|9 38.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 75499597 - 75559637

NM_016963 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
123677534559075347956
236825127535264675352790
251326567535518775355330
265727647535712075357227
276528957535893275359062
289629857536297375363062
298631087536427975364401
310932657537717575377331
326634327538023275380398
343335907540730675407463

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30645500Full LengthBC082595tropomodulin 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058659  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016963 NP_058659 Q9JHJ0 Tropomodulin

Related Sequences

 
mRNAGenPeptSwissProt
AF177172 AAF31671 Q9JHJ0
AF237630 AAF45298 Q9JHJ0
BC082595 AAH82595 Q9JHJ0
AK050372 BAC34216 Q9JHJ0
AK084463 BAC39191 Q8C3Z3
AK147017 BAE27611 Q3TFA9
AK167723 BAE39765 Q9JHJ0
AK169218 BAE40989 Q3TFA9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tmod3 NP_058659 R.norvegicus Tmod3 300838   NP_001011997 95
H.sapiens TMOD3 29766 Gene Info NP_055362 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)