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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nptxr, neuronal pentraxin receptor
Sequence ID:NM_030689
Entrez Gene ID:73340
Ensembl ID:ENSMUSG00000022421

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 46.0 cM|15 E2

Chromosomal Position (from UCSC)

Chromosomal Position:15: 79789405 - 79804692

NM_030689 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2535907961678079620345
359137707962069579620874
377140187962303279623279
401942387962468579624904
423949737963440479635138

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5705707Full LengthBC098199neuronal pentraxin receptor
6826075Full LengthBC058962neuronal pentraxin receptor
9055708Full LengthBC141096neuronal pentraxin receptor
6306194IncompleteBC048914neuronal pentraxin receptor
6400185IncompleteBC060093neuronal pentraxin receptor
6809324IncompleteBC059870neuronal pentraxin receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001013378  NP_083039  NP_001013380  NP_109614  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001013360 NP_001013378 Q6TLW1 Pentaxin
Chromo
NM_001013362 NP_001013380 Q6TLW0 Pentaxin
Chromo
NM_028763 NP_083039 Q9DBY5 Chromo
NM_030689 NP_109614   Pentaxin

Related Sequences

 
mRNAGenPeptSwissProt
BC048240 AAH48240 Q9DBY5
BC058962 AAH58962 Q6PD36
BC098199 AAH98199 Q6PD36
BC141096 AAI41097 B9EIV5
BC152773 AAI52774  
AF316612 AAK11300 Q99J85
AY395907 AAQ95736 Q6TKP2
AY394487 AAQ98931 Q6TLW2
AY394488 AAQ98932 Q6TLW1
AY394489 AAQ98933 Q6TLW0
AK004679 BAB23467 Q9DBY5
AK017510 BAB30782 Q9CYM8
AK035250 BAC29001 Q9DBY5
AK146048 BAE26859 Q3UK98
AK146103 BAE26903 Q3UK98
AK147546 BAE27988 Q3UH69
AK147605 BAE28020 Q3UH37
AK162544 BAE36963 Q9CYM8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nptxr NP_109614 R.norvegicus Nptxr 81005   NP_110468 97
H.sapiens NPTXR 23467 Gene Info NP_055108 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)