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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col12a1, Collagen, type XII, alpha 1
Sequence ID:NM_007730
Entrez Gene ID:12816
Ensembl ID:ENSMUSG00000032332

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 E1|9 43.0

Chromosomal Position (from UCSC)

Chromosomal Position:9: 79620031 - 79647680

 Exon Info From UCSC:
NM_007730

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031756  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007730 NP_031756   fn3
VWA
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
U25652 AAA99719 Q60847
U57095 AAB07047 Q60847
AK164846 BAE37940 Q3TNZ7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col12a1 NP_031756 R.norvegicus Col12a1 25683   XP_243912 97
H.sapiens COL12A1 1303 Gene Info NP_004361 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)