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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Arpc5l, actin related protein 2/3 complex, subunit 5-like
Sequence ID:NM_028809
Entrez Gene ID:74192
Ensembl ID:ENSMUSG00000026755

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 B|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 39008138 - 39015872

NM_028809 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12063886365838863863
2072793886863438868706
2804563886924238869418
45712713887057738871391

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4977391Full LengthBC024482actin related protein 2/3 complex, subunit 5-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083085  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028809 NP_083085 Q9D898 P16-Arc

Related Sequences

 
mRNAGenPeptSwissProt
BC024482 AAH24482 Q9D898
AK008255 BAB25561 Q9D898

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arpc5l NP_083085 R.norvegicus Arpc5l-ps1 501132   XP_576552 99
H.sapiens ARPC5L 81873 Gene Info NP_112240 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)