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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tlr4, toll-like receptor 4
Sequence ID:NM_021297
Entrez Gene ID:21898
Ensembl ID:ENSMUSG00000039005

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C1|4 33.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 66827624 - 66841715

NM_021297 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11116648884466488954
1122786649492766495093
27938466650026266503829

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3493732Full LengthBC029856toll-like receptor 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067272  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021297 NP_067272 Q9QUK6 LRR_1
TIR

Related Sequences

 
mRNAGenPeptSwissProt
AF095353 AAC99411 Q9QUK6
AF110133 AAD29272 Q9QUK6
AF185285 AAF04278 Q9QUK6
BC029856 AAH29856 Q8K2T5
AK154297 BAE32498 Q3U4D4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tlr4 NP_067272 R.norvegicus Tlr4 29260   NP_062051 86
H.sapiens TLR4 7099 Gene Info NP_612564 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)