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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Chst1, carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
Sequence ID:NM_023850
Entrez Gene ID:76969
Ensembl ID:ENSMUSG00000027221

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 D-E1|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 92611772 - 92615250

NM_023850 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14429243986392440304
4435729245185092451979
57326829245329992455408

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1245270Full LengthBC030667carbohydrate (keratan sulfate Gal-6) sulfotransferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_076339  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_023850 NP_076339 Q3UY35
Q9EQC0
EC 2.8.2.21 Sulfotransfer_1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF280087 AAG48245 Q3UY35
Q9EQC0
EC 2.8.2.21
BC030667 AAH30667 Q3UY35
Q9EQC0
EC 2.8.2.21
AK011344 BAB27556 Q9EQC0 EC 2.8.2.21
AK134997 BAE22378 Q3UY35
Q9EQC0
EC 2.8.2.21

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chst1 NP_076339 R.norvegicus Chst1 295934   NP_001011955 98
H.sapiens CHST1 8534 Gene Info NP_003645 94
A.gambiae AgaP_AGAP009809 1279223   XP_318914 34
D.melanogaster CG31637 33914   NP_609043 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)