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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nlrp10, NLR family, pyrin domain containing 10
Sequence ID:NM_175532
Entrez Gene ID:244202
Ensembl ID:ENSMUSG00000049709

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 E3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 108923964 - 108930178

NM_175532 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14142116065366116069507
41434444116070366116070667
44454483116073633116073671

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40062457Full LengthBC113194NLR family, pyrin domain containing 10
40062458Full LengthBC113801NLR family, pyrin domain containing 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780741  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175532 NP_780741 Q8CCN1
Q6JGS9
PAAD_DAPIN
NACHT

Related Sequences

 
mRNAGenPeptSwissProt
BC113194 AAI13195 Q6JGS9
BC113801 AAI13802 Q6JGS9
AY355344 AAR14741 Q8CCN1
Q6JGS9
AY489193 AAS67385 Q8CCN1
Q6JGS9
AK032446 BAC27872 Q8CCN1
Q6JGS9
AK028575 BAE43265 Q3V3Z6
AK028802 BAE43266 Q3V3Z4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nlrp10 NP_780741 R.norvegicus Nlrp10 293426   NP_001099761 90
H.sapiens NLRP10 338322 Gene Info NP_789791 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)