Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Syt11, synaptotagmin XI
Sequence ID:NM_018804
Entrez Gene ID:229521
Ensembl ID:ENSMUSG00000068923

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, retina, salivary gland, skin, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1|3 42.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 88747699 - 88772324

NM_018804 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1933288854862288551931
332934528855270088552823
345342768856564788566470
427745858857621288576520

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5030173Full LengthBC025207synaptotagmin XI
5698412Full LengthBC054526synaptotagmin XI

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061274  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018804 NP_061274 Q9R0N3 C2

Related Sequences

 
mRNAGenPeptSwissProt
BC025207 AAH25207 Q8QZS8
BC054526 AAH54526 Q9R0N3
AB026808 BAA85780 Q9R0N3
AK122200 BAC65482 Q80U82
AK144169 BAE25745 Q9R0N3
AK158745 BAE34639 Q3TYC4
AK164082 BAE37617 Q3TPW8
AK164368 BAE37761 Q3TPH5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syt11 NP_061274 R.norvegicus Syt11 60568   NP_113855 98
H.sapiens SYT11 23208 Gene Info NP_689493 95
A.gambiae AgaP_AGAP001800 1281315   XP_321260 53
D.melanogaster Syt4 40876   NP_477464 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)