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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Smarce1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Sequence ID:NM_020618
Entrez Gene ID:57376
Ensembl ID:ENSMUSG00000037935

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 99209049 - 99230445

 Exon Info From UCSC:
NM_020618

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5251562Full LengthBC061498SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
5685483Full LengthBC065043SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
6397290Full LengthBC047141SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065643  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020618 NP_065643 O54941 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC047141 AAH47141 O54941
BC061498 AAH61498 O54941
BC065043 AAH65043 O54941
EU327022 ACA81396 C0IMW9
EU327023 ACA81397 C0IMX0
EU327024 ACA81398 C0IMX1
EU327025 ACA81399 C0IMX0
EU327026 ACA81400 C0IMX3
AK076177 BAC36233 O54941

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smarce1 NP_065643 R.norvegicus Smarce1 303518   NP_001020164 99
H.sapiens SMARCE1 6605 Gene Info NP_003070 97
D.melanogaster dalao 31846   NP_572530 47
A.gambiae AgaP_AGAP001994 1281127   XP_321065 46
C.elegans Y71H2AM.17 175393   NP_497613 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta