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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scp2, sterol carrier protein 2, liver
Sequence ID:NM_011327
Entrez Gene ID:20280
Ensembl ID:ENSMUSG00000028603

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C7|4 52.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 108043840 - 108071309

 Exon Info From UCSC:
NM_011327

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3710340Full LengthBC018384sterol carrier protein 2, liver
5123611Full LengthBC034613sterol carrier protein 2, liver

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035457  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_011327 NP_035457 P32020 EC 2.3.1.176 SCP2
Thiolase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M91458 AAA40098 P32020 EC 2.3.1.176
M62361 AAA40099 P32020 EC 2.3.1.176
BC018384 AAH18384 P32020 EC 2.3.1.176
BC034613 AAH34613 P32020 EC 2.3.1.176
AK002425 BAB22092 P32020 EC 2.3.1.176

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scp2 NP_035457 R.norvegicus Scp2 25541   NP_612517 91
H.sapiens SCP2 6342 Gene Info NP_002970 89
D.melanogaster ScpX 44183   NP_524715 61
A.gambiae AgaP_AGAP007921 1278036   XP_317563 60
C.elegans Y57A10C.6 174881   NP_496639 59
N.crassa NCU03372 3872454   XP_956307 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)