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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rab10, RAB10, member RAS oncogene family
Sequence ID:NM_016676
Entrez Gene ID:19325

Database Links

UniGeneEntrez GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 A1.1|12 2.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:12: 3249786 - 3309418

NM_016676 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21246132474293249869
2462256332526113252712
2564265332532683253357
2654279232568663257004
2793285332646883264748
2854353133092913309968

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6848840Full LengthBC056374RAB10, member RAS oncogene family
6822417IncompleteBC052735RAB10, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057885  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016676 NP_057885 P61027
Q4FJL0
Ras

Related Sequences

 
mRNAGenPeptSwissProt
AF035646 AAC29313 P61027
Q4FJL0
BC056374 AAH56374 P61027
Q4FJL0
AK008725 BAB25858 P61027
AK028320 BAC25878 P61027
Q4FJL0
AK087964 BAC40062 P61027
Q4FJL0
AK134988 BAE22371 P61027
Q4FJL0
AK146357 BAE27109 P61027
Q4FJL0
AK150319 BAE29464 P61027
Q4FJL0
AK150384 BAE29515 P61027
Q4FJL0
AK150791 BAE29855 Q3U621
AK151473 BAE30429 P61027
Q4FJL0
AK153315 BAE31896 P61027
Q4FJL0
AK153325 BAE31904 Q3U621
AK159383 BAE35038 P61027
Q4FJL0
AK159845 BAE35423 P61027
Q4FJL0
AK159988 BAE35538 P61027
Q4FJL0
AK160960 BAE36116 P61027
Q4FJL0
AK168320 BAE40259 P61027
Q4FJL0
AB232604 BAF02866 Q4FJL0
CT010394 CAJ18601 P61027
Q4FJL0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rab10 NP_057885 H.sapiens RAB10 10890 Gene Info NP_057215 100
R.norvegicus Rab10 50993   NP_059055 100
D.melanogaster Rab10 33025   NP_523419 82
C.elegans rab-10 266836   NP_491857 79
A.gambiae AgaP_AGAP000671 1272433   XP_311197 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)