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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stmn1, stathmin 1
Sequence ID:NM_019641
Entrez Gene ID:16765
Ensembl ID:ENSMUSG00000028832

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D3|4 65.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 134468366 - 134473458

NM_019641 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1110134024234134024343
111183134026017134026089
184356134026581134026753
357548134028718134028909
5491059134029246134029756

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3154091Full LengthBC010581stathmin 1
4500926Full LengthBC031831stathmin 1
6492045Full LengthBC054396stathmin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062615  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019641 NP_062615 Q545B6
P54227
Stathmin

Related Sequences

 
mRNAGenPeptSwissProt
BC010581 AAH10581 Q545B6
P54227
BC031831 AAH31831 Q545B6
P54227
BC054396 AAH54396 Q545B6
P54227
AK002606 BAB22225 Q9DCP3
AK012231 BAB28109 Q545B6
P54227
AK012347 BAB28178 Q545B6
P54227
AK013302 BAB28778 Q9CYU5
AK014108 BAB29161 Q9CXQ8
AB064953 BAB61894 Q91XT3
AK088628 BAC40463 Q8C2H3
X94915 CAA64401 Q545B6
P54227

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stmn1 NP_062615 H.sapiens STMN1 3925 Gene Info NP_981946 99
R.norvegicus Stmn1 29332   NP_058862 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta