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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gja1, gap junction protein, alpha 1
Sequence ID:NM_010288
Entrez Gene ID:14609
Ensembl ID:ENSMUSG00000050953

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B4|10 29.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 56377319 - 56387877

NM_010288 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12195609710556097323
22031055610733956110224

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3599347Full LengthBC006894gap junction protein, alpha 1
30063597Full LengthBC055375gap junction protein, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034418  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010288 NP_034418 P23242 Connexin
Connexin43

Related Sequences

 
mRNAGenPeptSwissProt
M63801 AAA53027 P23242
BC006894 AAH06894 P23242
BC055375 AAH55375 Q7TMQ1
AY427554 AAR06891 Q6T9D4
AY427555 AAR06892 Q6T9D4
AY427556 AAR06893 Q6T9D4
AY427557 AAR06894 Q6T9D4
AY427558 AAR06895 Q6T9D4
AY427559 AAR06896 Q6T9D4
AY427560 AAR06897 Q6T9D4
AY427561 AAR06898 Q6T9D4
AK011459 BAB27632 Q9CT20
AK029291 BAC26375 P23242
AK036979 BAC29656 P23242
AK081668 BAC38285 Q8C4N2
AK139214 BAE23920 Q3UTR0
AK145692 BAE26592 P23242
AK165986 BAE38502 P23242
X61576 CAA43778 P23242
CT010327 CAJ18535 P23242

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gja1 NP_034418 R.norvegicus Gja1 24392   NP_036699 100
H.sapiens GJA1 2697 Gene Info NP_000156 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta