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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Papd5, PAP associated domain containing 5
Sequence ID:NM_001164497
NM_001164498
NM_001164499
Entrez Gene ID:214627
Ensembl ID:ENSMUSG00000036779

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 C3|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 88252409 - 88259726

 Exon Info From UCSC:
NM_001164497
NM_001164498
NM_001164499

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9053344Full LengthBC144796PAP associated domain containing 5
9053345Full LengthBC144797PAP associated domain containing 5
40131040Full LengthBC145737PAP associated domain containing 5
6854326IncompleteBC080314PAP associated domain containing 5

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164497 NP_001157969    
NM_001164498 NP_001157970    
NM_001164499 NP_001157971    

Related Sequences

 
mRNAGenPeptSwissProt
BC080314 AAH80314 Q68ED3
BC144796 AAI44797 Q68ED3
BC144797 AAI44798 B7ZMU2
BC145737 AAI45738 Q68ED3
AK030850 BAC27158 Q68ED3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Papd5 NP_001157969 H.sapiens PAPD5 64282 Gene Info NP_001035374 93
D.melanogaster Trf4-1 31795   NP_996381 55
A.gambiae AgaP_AGAP001564 1281604   XP_321547 48
A.thaliana AT5G53770 835458   NP_568798 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)