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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Bap1, Brca1 associated protein 1
Sequence ID:NM_027088
Entrez Gene ID:104416
Ensembl ID:ENSMUSG00000021901

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14 B|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 31251586 - 31259929

 Exon Info From UCSC:
NM_027088

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6402443Full LengthBC050901Brca1 associated protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081364  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_027088 NP_081364 Q99PU7 EC 3.4.19.12 Peptidase_C12

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC050901 AAH50901 Q99PU7 EC 3.4.19.12
AB047820 BAB32976 Q99PU7 EC 3.4.19.12
AK129108 BAC97918 Q99PU7 EC 3.4.19.12
AK170576 BAE41889 Q99PU7 EC 3.4.19.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Bap1 NP_081364 R.norvegicus Bap1 306257   NP_001100762 97
H.sapiens BAP1 8314 Gene Info NP_004647 94
D.melanogaster calypso 36794   NP_788374 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)