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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gm12597, Predicted gene 12597
Sequence ID:NM_206870
Entrez Gene ID:242517
Ensembl ID:ENSMUSG00000096011

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C4|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 88557672 - 88558245

NM_206870 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15738820357688204148

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40091189Full LengthBC116216predicted gene, OTTMUSG00000007655

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_996753  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_206870 NP_996753 Q61718 Interferon

Related Sequences

 
mRNAGenPeptSwissProt
BC116216 AAI16217 Q61718

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gm12597 NP_996753 M.musculus Ifna6 15969 Gene Info NP_996754 90
M.musculus Ifna7 15970 Gene Info NP_032360 89
M.musculus Ifna5 15968 Gene Info NP_034635 88
M.musculus Ifna12 242519 Gene Info NP_796335 88
M.musculus Ifnab 15974 Gene Info NP_032362 88
M.musculus Ifna1 15962 Gene Info NP_034632 87
M.musculus Ifna14 404549 Gene Info NP_996858 86
M.musculus Gm13280 230398 Gene Info NP_996750 84
M.musculus Ifna13 230396 Gene Info NP_796321 84
M.musculus Ifna11 15964 Gene Info NP_032359 83
M.musculus Ifna2 15965 Gene Info NP_034633 83
M.musculus Ifna9 15972 Gene Info NP_034637 82
R.norvegicus Ifna5 690894   XP_001076062 80
R.norvegicus LOC680208 680208   XP_001056120 80
R.norvegicus RGD1561246 502959   XP_578464 79
H.sapiens IFNA13 3447 Gene Info NP_008831 62
H.sapiens IFNA1 3439 Gene Info NP_076918 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)