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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vmn1r50, vomeronasal 1 receptor 50
Sequence ID:NM_053225
Entrez Gene ID:113852
Ensembl ID:ENSMUSG00000094553

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 D1|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 90107274 - 90108207

NM_053225 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19339005726890058200

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40050746Full LengthBC107183vomeronasal 1 receptor, B1
40050947IncompleteBC115706vomeronasal 1 receptor, B1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444455  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053225 NP_444455 Q9EP51 V1R

Related Sequences

 
mRNAGenPeptSwissProt
BC107183 AAI07184 Q9EP51
BC115706 AAI15707 Q1LZM7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vmn1r50 NP_444455 M.musculus Vmn1r49 24112 Gene Info NP_036041 81
M.musculus Vmn1r44 113854 Gene Info NP_444457 78
M.musculus Vmn1r53 113853 Gene Info NP_444456 78
M.musculus Vmn1r46 113856 Gene Info NP_444459 77
M.musculus Vmn1r40 113855 Gene Info NP_444458 76
M.musculus Vmn1r41 113857 Gene Info NP_444460 76
M.musculus Vmn1r239-ps 100504631   XP_003085359 76
R.norvegicus Vom1r101 286892   NP_775135 75
R.norvegicus Vom1r96 494275   NP_001008927 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)