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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vmn1r47, vomeronasal 1 receptor 47
Sequence ID:NM_053219
Entrez Gene ID:113846
Ensembl ID:ENSMUSG00000060724

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 D1|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 90021888 - 90022820

NM_053219 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19338997188189972813

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063870Full LengthBC160222vomeronasal 1 receptor, A4
40050739IncompleteBC111822vomeronasal 1 receptor, A4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444449  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053219 NP_444449 Q9EQ51 V1R

Related Sequences

 
mRNAGenPeptSwissProt
BC111822 AAI11823 Q9EQ51
BC160222 AAI60222  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vmn1r47 NP_444449 M.musculus Vmn1r48 113845 Gene Info NP_444448 95
M.musculus Vmn1r45 22297 Gene Info NP_035814 85
M.musculus Vmn1r51 22296 Gene Info NP_035813 80
M.musculus Vmn1r42 113848 Gene Info NP_444451 78
M.musculus Vmn1r43 113847 Gene Info NP_444450 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)