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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hist1h1a, histone cluster 1, H1a
Sequence ID:NM_030609
Entrez Gene ID:80838
Ensembl ID:ENSMUSG00000049539

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13|13 A3.2

Chromosomal Position (from UCSC)

Chromosomal Position:Unknown

NM_030609 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17462385553623856281

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40126139Full LengthBC116820histone cluster 1, H1a
40126169Full LengthBC116850histone cluster 1, H1a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_085112  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030609 NP_085112 P43275 Linker_histone

Related Sequences

 
mRNAGenPeptSwissProt
BC116820 AAI16821 P43275
BC116850 AAI16851 P43275

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hist1h1a NP_085112 R.norvegicus Hist1h1a 291145   NP_001099583 95
H.sapiens HIST1H1A 3024 Gene Info NP_005316 81
C.elegans hil-3 181073   NP_509375 45
C.elegans hil-2 177390   NP_741417 44
C.elegans hil-6 186584   NP_503554 44
C.elegans his-24 181545   NP_510410 41
C.elegans hil-5 172242   NP_491678 38
C.elegans hil-4 178866   NP_504277 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)