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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ifna4, interferon alpha 4
Sequence ID:NM_010504
Entrez Gene ID:15967
Ensembl ID:ENSMUSG00000070904

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C4|4 42.6 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 88841860 - 88842421

NM_010504 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16448848771988488362

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8734098Full LengthBC119349interferon alpha 4
8734100Full LengthBC119351interferon alpha 4
40091191Full LengthBC116217interferon alpha 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034634  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010504 NP_034634 Q540C2
P07351
Interferon

Related Sequences

 
mRNAGenPeptSwissProt
BC116217 AAI16218 Q540C2
BC119349 AAI19350 Q540C2
BC119351 AAI19352 Q540C2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ifna4 NP_034634 R.norvegicus LOC690891 690891   XP_001076043 81
R.norvegicus Ifna4 298205   NP_001100137 81
R.norvegicus Ifna2 298213   XP_233152 80
R.norvegicus RGD1565225 500491   XP_575856 78
R.norvegicus Ifna1 298210   NP_001014786 78
R.norvegicus Ifna11 298211   XP_233150 78
R.norvegicus RGD1564517 502964   XP_578469 77
R.norvegicus RGD1564897 502962   XP_578467 76
R.norvegicus RGD1559679 502961   XP_578466 75
H.sapiens IFNA16 3449 Gene Info NP_002164 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)