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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Atf6, activating transcription factor 6
Sequence ID:NM_001081304
Entrez Gene ID:226641
Ensembl ID:ENSMUSG00000026663

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H3|1 85.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 170708704 - 170867749

 Exon Info From UCSC:
NM_001081304

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055640Full LengthBC141028activating transcription factor 6
5009420IncompleteBC043662activating transcription factor 6

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001081304 NP_001074773    

Related Sequences

 
mRNAGenPeptSwissProt
BC043662 AAH43662 Q811K9
BC141028 AAI41029 B2RU98
AK036335 BAC29389 Q8BZ84

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atf6 NP_001074773 R.norvegicus Atf6 304962   NP_001100666 95
H.sapiens ATF6 22926 Gene Info NP_031374 87
A.gambiae AgaP_AGAP008832 3291826   XP_552696 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)