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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cd180, CD180 antigen
Sequence ID:NM_008533
Entrez Gene ID:17079
Ensembl ID:ENSMUSG00000021624

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D1|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 102693567 - 102706471

NM_008533 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1232103483637103483868
233399103492780103492946
4002326103494784103496710

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100014949Full LengthBC146550CD180 antigen
100014420BC140436CD180 antigen

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032559  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008533 NP_032559 Q62192 LRR_1
LRRCT

Related Sequences

 
mRNAGenPeptSwissProt
BC140436 AAI40437 Q62192
BC146550 AAI46551  
D37797 BAA07043 Q62192
AK089255 BAC40816 Q62192
AK156548 BAE33754 Q3U0U7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cd180 NP_032559 R.norvegicus Cd180 294706   NP_001099875 88
H.sapiens CD180 4064 Gene Info NP_005573 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)