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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Vma21, VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
Sequence ID:NM_001081356
Entrez Gene ID:67048
Ensembl ID:ENSMUSG00000073131

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:X|X

Chromosomal Position (from UCSC)

Chromosomal Position:X: 71816809 - 71821591

NM_001081356 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11626906211769062278
1632726906540669065515
27341746906614369070044

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1361961Full LengthBC094639RIKEN cDNA 2610030H06 gene

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001081356 NP_001074825 Q78T54  

Related Sequences

 
mRNAGenPeptSwissProt
BC028317 AAH28317 Q78T54
BC094639 AAH94639 Q78T54
AK049296 BAC33664 Q78T54
AK049488 BAC33774 Q78T54
AK138582 BAE23704 Q78T54
AK164163 BAE37657 Q78T54
AJ748652 CAG38686 Q78T54

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vma21 NP_001074825 R.norvegicus Vma21 501658   XP_577054 99
H.sapiens VMA21 203547 Gene Info NP_001017980 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)