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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Btf3, basic transcription factor 3
Sequence ID:NM_001170540
Entrez Gene ID:218490
Ensembl ID:ENSMUSG00000021660

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D1|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 98309917 - 98316980

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2648048Full LengthBC008233basic transcription factor 3
5371708Full LengthBC080837basic transcription factor 3
30244324Full LengthBC064010basic transcription factor 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663430  

Protein Infomation

NM_001170540 NP_001164011    
NM_145455 NP_663430 Q64152 NAC

Related Sequences

BC008233 AAH08233 Q3UJR8
BC064010 AAH64010 Q64152
BC080837 AAH80837 Q3UJR8
AK006780 BAB24736 Q9D9L3
AK139664 BAE24097 Q3UJR8
AK146332 BAE27087 Q3UJR8
AK147171 BAE27735 Q3UJR8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Btf3 NP_663430 R.norvegicus Btf3 294680   NP_001008310 100
H.sapiens BTF3 689 Gene Info NP_001032726 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)