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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Arcn1, archain 1
Sequence ID:NM_145985
Entrez Gene ID:213827
Ensembl ID:ENSMUSG00000032096

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A5.2|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 44742047 - 44767812

NM_145985 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1718884455022744552098
188920934455350044553704
209422024455840744558515
220323504455929844559445
235125164456019244560357
251726814456520244565366
268228874456664344566848
288830674456696344567142
306833314456804444568307
333234704457575244575890

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4480874Full LengthBC017124archain 1
4954556Full LengthBC034754archain 1
5351777Full LengthBC023728archain 1
5368060Full LengthBC033387archain 1
30461105Full LengthBC083152archain 1
3599744IncompleteBC008236archain 1
5100703IncompleteBC024127archain 1
6509862IncompleteBC050874archain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666097  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145985 NP_666097 Q5XJY5 Adap_comp_sub

Related Sequences

 
mRNAGenPeptSwissProt
BC017124 AAH17124 Q5XJY5
BC023728 AAH23728 Q5XJY5
BC024127 AAH24127 Q8R1S6
BC033387 AAH33387 Q5XJY5
BC034754 AAH34754 Q5XJY5
BC083152 AAH83152 Q5XJY5
AK028556 BAC26007 Q5XJY5
AK031385 BAC27377 Q8C0G7
AK154066 BAE32352 Q3U4S9
AK170005 BAE41508 Q3TDU1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arcn1 NP_666097 R.norvegicus Arcn1 300674   NP_001007663 100
H.sapiens ARCN1 372 Gene Info NP_001646 99
A.gambiae AgaP_AGAP010719 1272520   XP_311433 62
D.melanogaster deltaCOP 45250   NP_001162642 61
C.elegans C13B9.3 175940   NP_498463 53
A.thaliana AT5G05010 830383   NP_001031836 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)