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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Arpc1a, actin related protein 2/3 complex, subunit 1A
Sequence ID:NM_019767
Entrez Gene ID:56443
Ensembl ID:ENSMUSG00000029621

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 145083868 - 145108756

NM_019767 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1104145844737145844840
105198145852021145852114
199303145853326145853430
304526145856920145857142
527634145858084145858191
635847145861925145862137
848923145865310145865385
9241117145865566145865759
11181208145867913145868003
12091588145869245145869624

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3485409Full LengthBC001988actin related protein 2/3 complex, subunit 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062741  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019767 NP_062741 Q9R0Q6 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC001988 AAH01988 Q9R0Q6
AB024984 BAA84685 Q9R0Q6
AK003986 BAB23107 Q9CTB9
AK076107 BAC36187 Q9R0Q6
AK145663 BAE26575 Q9R0Q6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arpc1a NP_062741 H.sapiens ARPC1A 10552 Gene Info NP_006400 99
D.melanogaster Sop2 34793   NP_476596 60
C.elegans arx-3 3565442   NP_499570 58
A.gambiae AgaP_AGAP008908 1279875   XP_319655 57
S.pombe arc1 2540002   NP_595909 49
N.crassa NCU02781 3880425   XP_964276 45
S.cerevisiae ARC40 852536   NP_009793 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)