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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ubb, ubiquitin B
Sequence ID:NM_011664
Entrez Gene ID:22187
Ensembl ID:ENSMUSG00000019505

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B2|11 35.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 62551503 - 62553206

NM_011664 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1926236500562365096
9311656236564162366713

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5123849Full LengthBC019850ubiquitin B
6435236Full LengthBC066197ubiquitin B
30787432Full LengthBC100341ubiquitin B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035794  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011664 NP_035794 Q78XY9 ubiquitin

Related Sequences

 
mRNAGenPeptSwissProt
BC019850 AAH19850 P0CG49
BC066197 AAH66197 Q6NZC5
BC100341 AAI00342 Q78XY9
AK003190 BAB22630 P0CG49
Q5SX22
AK007273 BAB24930 Q78XY9
AK010413 BAB26919 Q78XY9
AK010625 BAB27071 Q78XY9
AK012443 BAB28242 P0CG49
AK013027 BAB28606 Q78XY9
AK013873 BAB29028 P0CG49
AK132747 BAE21330 Q78XY9
X51703 CAA35999 P0CG49
Q78XY9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ubb NP_035794 R.norvegicus Ubb 192255   NP_620250 100
A.thaliana UBQ14 828148   NP_001118922 96
A.thaliana UBQ3 831899   NP_001031824 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)