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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pabpc1, poly(A) binding protein, cytoplasmic 1
Sequence ID:NM_008774
Entrez Gene ID:18458
Ensembl ID:ENSMUSG00000022283

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15|15 C

Chromosomal Position (from UCSC)

Chromosomal Position:15: 36599281 - 36600613

 Exon Info From UCSC:
NM_008774

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3491915Full LengthBC003870poly(A) binding protein, cytoplasmic 1
3988101Full LengthBC023145poly(A) binding protein, cytoplasmic 1
4022169Full LengthBC011207poly(A) binding protein, cytoplasmic 1
6816124Full LengthBC046233poly(A) binding protein, cytoplasmic 1
3485544IncompleteBC003928poly(A) binding protein, cytoplasmic 1
3587950IncompleteBC004587poly(A) binding protein, cytoplasmic 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032800  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008774 NP_032800 P29341 RRM_1
PABP

Related Sequences

 
mRNAGenPeptSwissProt
BC003870 AAH03870 P29341
BC003928 AAH03928 Q05DT1
BC004587 AAH04587 Q99KL3
BC011207 AAH11207 P29341
BC023145 AAH23145 P29341
BC046233 AAH46233 P29341
AK005009 BAB23742 Q9DBE3
AK044829 BAC32110 P29341
AK089747 BAC40951 Q8BN32
AK133196 BAE21553 P29341
AK152064 BAE30919 Q3U8U8
AK159703 BAE35302 P29341
AK159733 BAE35327 P29341
AK160968 BAE36120 P29341
AK161123 BAE36203 P29341
AK161671 BAE36522 P29341
AK168466 BAE40360 P29341
X65553 CAA46522 P29341

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pabpc1 NP_032800 H.sapiens PABPC1 26986 Gene Info NP_002559 100
R.norvegicus Pabpc1 171350   NP_599180 100
S.cerevisiae PAB1 856912   NP_011092 57
S.pombe pabp 2541505   NP_593377 57
P.falciparum PFL1170w 811286   XP_001350640 54
A.thaliana PAB8 841399   NP_001185184 52
A.thaliana PAB2 829557   NP_195137 51
N.crassa NCU04799 3876563   XP_960425 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta