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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Arf1, ADP-ribosylation factor 1
Sequence ID:NM_001130408
NM_007476
Entrez Gene ID:11840
Ensembl ID:ENSMUSG00000048076

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11|11 B2

Chromosomal Position (from UCSC)

Chromosomal Position:11: 59211413 - 59228216

 Exon Info From UCSC:
NM_001130408
NM_007476

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4012689Full LengthBC031986ADP-ribosylation factor 1
4009585IncompleteBC021403ADP-ribosylation factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031502  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130408 NP_001123880    
NM_007476 NP_031502 P84078 Arf

Related Sequences

 
mRNAGenPeptSwissProt
BC031986 AAH31986 P84078
D87898 BAA13490 P84078
AK148458 BAE28566 P84078
AK148873 BAE28685 P84078
AK150092 BAE29300 P84078
AK150699 BAE29778 P84078
AK151223 BAE30215 P84078
AK151225 BAE30217 P84078
AK151696 BAE30620 P84078
AK151821 BAE30718 P84078
AK152015 BAE30877 P84078
AK152382 BAE31170 P84078
AK152479 BAE31253 P84078
AK153132 BAE31745 P84078
AK159174 BAE34874 P84078
AK167000 BAE39179 P84078
AK167129 BAE39276 P84078
AK167543 BAE39610 P84078
AK167931 BAE39935 P84078
AK168081 BAE40054 P84078
AK168686 BAE40532 P84078
AK169166 BAE40945 P84078
AK170586 BAE41895 P84078

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arf1 NP_031502 R.norvegicus Arf1 64310   NP_071963 100
A.thaliana ARF1 838957   NP_564195 90
A.thaliana ARFA1D 843385   NP_974120 90
A.thaliana ARFA1F 837606   NP_172533 89
A.thaliana ARFA1E 825402   NP_001190162 89
A.thaliana ARF1A1C 819330   NP_182239 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta