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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cst6, cystatin E/M
Sequence ID:NM_028623
Entrez Gene ID:73720
Ensembl ID:ENSMUSG00000024846

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19 4.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 5347860 - 5349385

NM_028623 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1334553447045348048
3346347153483965348521
3472395153490945349573

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6770352Full LengthBC061036cystatin E/M
1333340IncompleteBC027680cystatin E/M

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082899  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028623 NP_082899 Q9D1B1 Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
BC027680 AAH27680 Q8K397
BC061036 AAH61036 Q9D1B1
AK003744 BAB22976 Q9D1B1
AK078116 BAC37132 Q9D1B1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cst6 NP_082899 R.norvegicus Cst6 171096   NP_598250 93
H.sapiens CST6 1474 Gene Info NP_001314 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)