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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Shmt1, serine hydroxymethyltransferase 1 (soluble)
Sequence ID:NM_009171
Entrez Gene ID:20425
Ensembl ID:ENSMUSG00000020534

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 60789042 - 60811091

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4160579Full LengthBC026055serine hydroxymethyltransferase 1 (soluble)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033197  

Protein Infomation

NM_009171 NP_033197 P50431 EC SHMT

Related Sequences

BC026055 AAH26055 P50431 EC
AF237702 AAK15040 P50431 EC
AK010439 BAB26940 Q9CWR5  
X94478 CAA64225 P50431 EC
X94479 CAA64226 P50431 EC

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Shmt1 NP_033197 R.norvegicus Shmt1 287379   NP_001041307 97
H.sapiens SHMT1 6470 Gene Info NP_004160 92
A.gambiae AgaP_AGAP001065 1278659   XP_318298 66
C.elegans mel-32 175915   NP_741197 62
D.melanogaster CG3011 31524   NP_572278 61
A.thaliana SHM1 829949   NP_195506 60
S.pombe shm2 2542242   NP_593668 59
N.crassa NCU05805 3876196   XP_960065 58
S.cerevisiae SHM1 852565   NP_009822 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)