Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Shmt1, serine hydroxymethyltransferase 1 (soluble)
Sequence ID:NM_009171
Entrez Gene ID:20425
Ensembl ID:ENSMUSG00000020534

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 60789042 - 60811091

 Exon Info From UCSC:
NM_009171

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4160579Full LengthBC026055serine hydroxymethyltransferase 1 (soluble)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033197  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009171 NP_033197 P50431 EC 2.1.2.1 SHMT

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC026055 AAH26055 P50431 EC 2.1.2.1
AF237702 AAK15040 P50431 EC 2.1.2.1
AK010439 BAB26940 Q9CWR5  
X94478 CAA64225 P50431 EC 2.1.2.1
X94479 CAA64226 P50431 EC 2.1.2.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Shmt1 NP_033197 R.norvegicus Shmt1 287379   NP_001041307 97
H.sapiens SHMT1 6470 Gene Info NP_004160 92
A.gambiae AgaP_AGAP001065 1278659   XP_318298 66
C.elegans mel-32 175915   NP_741197 62
D.melanogaster CG3011 31524   NP_572278 61
A.thaliana SHM1 829949   NP_195506 60
S.pombe shm2 2542242   NP_593668 59
N.crassa NCU05805 3876196   XP_960065 58
S.cerevisiae SHM1 852565   NP_009822 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)